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Table 2 Hybridisation conditions for oligonucleotide probes used in this study

From: A randomised, double-blind, placebo controlled cross-over study to determine the gastrointestinal effects of consumption of arabinoxylan-oligosaccharides enriched bread in healthy volunteers

Probe name

Sequence (5’ to 3’)

Hybridisation pre-treatment

Formamide (%) for hybridisation

Temperature (°C)

Bacteria covered

 

Hybridisation Washing

Ato291

GGTCGGTCTCTCAACCC

Lysozyme

0

50

50

Atopobuim- Coriobacterium

[33]

Bac303

CCAATGTGGGGGACCTT

None

0

46

48

Bacteroides – Prevotella

[34]

Bif164

CATCCGGCATTACCACCC

Lysozyme

0

50

50

Bifidobacterium spp

[35]

Chis150

TTATGCGGTATTAATCTYCCTTT

None

0

50

50

Clostridium histolyticum- Clostridium perfringens

[36]

Erec482

GCTTCTTAGTCARGTACCG

None

0

50

50

Eubacterium rectale- Clostridium coccoides

[36]

Lab158

GGTATTAGCAYCTGTTTCCA

Lysozyme

0

50

50

Lactobacillus- Enterococcus

[37]

Eco1531

CACCGTAGTGCCTCGTCATCA

None

35

37

37

Escherichia coli

[38]

Rrec584

TCAGACTTGCCGYACCGC

None

0

50

50

Roseburia and Eubacterium rectale

[39]

Fprau645

CCTCTGCACTACTCAAGAAAAAC

Lysozyme

15

46

48

Faecalibacterium prausnitzzi

[40]

EUB338‡

GCTGCCTCCCGTAGGAGT

None

35

46

48

Total bacteria 1

[41]

EUB338II‡

GCAGCCACCCGTAGGTGT

None

35

46

48

Total bacteria

[41]

EUB338III‡

GCTGCCACCCGTAGGTGT

None

35

46

48

Total bacteria

[41]