Probe name | Sequence (5’ to 3’) | Hybridisation pre-treatment | Formamide (%) for hybridisation | Temperature (°C) | Bacteria covered |  | |
---|---|---|---|---|---|---|---|
Hybridisation Washing | |||||||
Ato291 | GGTCGGTCTCTCAACCC | Lysozyme | 0 | 50 | 50 | Atopobuim- Coriobacterium | [33] |
Bac303 | CCAATGTGGGGGACCTT | None | 0 | 46 | 48 | Bacteroides – Prevotella | [34] |
Bif164 | CATCCGGCATTACCACCC | Lysozyme | 0 | 50 | 50 | Bifidobacterium spp | [35] |
Chis150 | TTATGCGGTATTAATCTYCCTTT | None | 0 | 50 | 50 | Clostridium histolyticum- Clostridium perfringens | [36] |
Erec482 | GCTTCTTAGTCARGTACCG | None | 0 | 50 | 50 | Eubacterium rectale- Clostridium coccoides | [36] |
Lab158 | GGTATTAGCAYCTGTTTCCA | Lysozyme | 0 | 50 | 50 | Lactobacillus- Enterococcus | [37] |
Eco1531 | CACCGTAGTGCCTCGTCATCA | None | 35 | 37 | 37 | Escherichia coli | [38] |
Rrec584 | TCAGACTTGCCGYACCGC | None | 0 | 50 | 50 | Roseburia and Eubacterium rectale | [39] |
Fprau645 | CCTCTGCACTACTCAAGAAAAAC | Lysozyme | 15 | 46 | 48 | Faecalibacterium prausnitzzi | [40] |
EUB338‡ | GCTGCCTCCCGTAGGAGT | None | 35 | 46 | 48 | Total bacteria 1 | [41] |
EUB338II‡ | GCAGCCACCCGTAGGTGT | None | 35 | 46 | 48 | Total bacteria | [41] |
EUB338III‡ | GCTGCCACCCGTAGGTGT | None | 35 | 46 | 48 | Total bacteria | [41] |