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Table 1 Characteristics of the single-nucleotide polymorphisms associated with serum 25-hydroxyvitamin D, calcium, and parathyroid hormone levels and their associations with coronary artery disease in patients with diabetes

From: The impact of serum 25-hydroxyvitamin D, calcium, and parathyroid hormone levels on the risk of coronary artery disease in patients with diabetes: a Mendelian randomization study

Traits

SNP

Chr

Nearby gene

EA

OA

EAF

25OHD/Calcium/PTH

CAD in patients with diabetes

Beta

SE

P

Beta

SE

P

25OHD

rs3755967

4

GC

C

T

0.72

0.089

0.002

4.74E-343

0.032

0.029

0.274

25OHD

rs12785878

11

DHCR7

T

G

0.75

0.036

0.002

3.80E-62

-0.055

0.033

0.090

25OHD

rs10741657

11

CYP2R1

A

G

0.40

0.031

0.002

2.05E-46

-0.001

0.027

0.972

25OHD

rs17216707

20

CYP24A1

T

C

0.79

0.026

0.003

8.14E-23

-0.033

0.035

0.344

25OHD

rs10745742

12

AMDHD1

T

C

0.40

0.017

0.002

1.88E-14

-0.019

0.028

0.495

25OHD

rs8018720

14

SEC23A

G

C

0.18

0.017

0.003

4.72E-09

0.019

0.034

0.586

Calcium

rs1801725

3

CASR

T

G

0.15

0.071

0.004

8.90E-86

0.052

0.039

0.186

Calcium

rs1570669

20

CYP24A1

G

A

0.34

0.018

0.003

9.10E-12

-0.001

0.028

0.981

Calcium

rs1550532

2

DGKD

C

G

0.31

0.018

0.003

8.20E-11

-0.017

0.028

0.545

Calcium

rs7481584

11

CARS

G

A

0.70

0.018

0.003

1.20E-10

-0.004

0.030

0.904

Calcium

rs780094

2

GCKR

T

C

0.42

0.017

0.003

1.30E-10

0.085

0.028

0.002

Calcium

rs7336933

13

DGKH

G

A

0.85

0.022

0.004

9.10E-10

-0.021

0.037

0.568

Calcium

rs10491003

10

GATA3

T

C

0.09

0.027

0.005

4.80E-09

-0.013

0.046

0.784

PTH

rs6127099

20

CYP24A1

T

A

0.34

0.070

0.003

2.40E-72

0.021

0.030

0.494

PTH

rs4074995

5

RGS14

G

A

0.71

0.030

0.003

3.30E-23

0.029

0.030

0.337

PTH

rs219779

21

CLDN14

G

A

0.75

0.040

0.003

8.90E-22

-0.017

0.030

0.582

PTH

rs4443100

22

RTDR1

G

C

0.32

0.020

0.003

4.10E-11

-0.025

0.029

0.390

PTH

rs73186030

3

CASR

T

C

0.14

0.030

0.004

1.20E-09

0.051

0.039

0.198

  1. SNP indicates single-nucleotide polymorphism, Chr chromosome, EA effect allele, OA other allele, EAF effect allele frequency, 25OHD 25-hydroxyvitamin D, PTH parathyroid hormone, CAD coronary artery disease, SE standard error